![]() ![]() ![]() Admixture LD decay estimate of admixture times into the Afrikaner population done in Malder. f4 test to test specific sources of ancestry in the Afrikaner population. Admixture fractions of the Afrikaner individuals at K=9 (ADMIXTURE). Admixture fractions of the Afrikaner individuals at K=6 (ADMIXTURE). ![]() Runs of of Homozygosity (RoH) for European populations and the Afrikaner population. Manhattan plots of selection scan results. Manhattan plot of Locus specific branch length (LSBL) results. Admixture analyses of the Asian extended dataset. B) Population variation on PC 1 and 2 summarized as averages and standard deviations. A) Afrikaner individuals (black circles) projected on a PCA based on European genetic variation from the POPRES dataset. Shared private alleles between the Afrikaner populations and populations with West-African ancestry. Fraction of shared private alleles between the Afrikaner population and a comparative population. ![]() The CEU (A) and Khomani (B) populations are fixed to show the best African and non-African sources to the Afrikaner population. Populations are colored according to regional affiliation. Principal component analysis for PC1-PC10 and the variation explained by PCs. Non-European admixture fractions (of K=6) sorted by ancestry fraction. ![]()
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